Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs111713798 chr1:150913257 C/T 4.32E-5 176 24.53 31.68 15 KM Plot
PCPG rs111715087 chr17:80500053 T/TTG 9.37E-7 174 25.92 22.42 8.75 KM Plot
PCPG rs11171803 chr12:56718422 T/C 1.01E-7 177 25.35 29.13 0.8 KM Plot
PCPG rs11171806 chr12:56733531 A/G 9.51E-8 178 0.8 27.33 25.08 KM Plot
PCPG rs111736578 chr2:121545824 G/A 0.000214 177 25.53 24.37 59.77 KM Plot
PCPG rs111778071 chr3:53087119 GA/G 7.94E-6 173 25.08 27.27 11.78 KM Plot
PCPG rs111786594 chr14:74457093 A/G 3.3E-6 177 25.08 30.63 10.3 KM Plot
PCPG rs111814267 chr14:74493013 T/G 1.57E-6 177 25.17 28.47 4.5 KM Plot
PCPG rs111828066 chr3:195726869 C/T 1.24E-5 177 24.52 31.47 13.38 KM Plot
PCPG rs111839189 chr17:1410684 T/C 1.46E-5 174 25.05 25 25.17 KM Plot
PCPG rs111843720 chr7:158675232 T/C 0 177 25.53 20.37 3.17 KM Plot
PCPG rs111844272 chr9:86453553 T/A 0.000128 176 26.22 24.7 14.47 KM Plot
PCPG rs111853690 chr13:114169933 A/G 3.87E-12 178 24.17 29.95 3.32 KM Plot
PCPG rs111871204 chr9:86440448 T/C 0.000131 175 26.22 24.93 14.47 KM Plot
PCPG rs111872568 chr14:74302663 G/C 4.55E-6 174 25.47 27.75 10.43 KM Plot